miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|262493307|gb|FP060918.1|FP060918 TTCAGACTCAACTACTACTCTCATACTCTCATCACAAAACAAAACCAATCACTCCTCCCTCCCTTTGGATTCGCCGGCGG
CGGTTTCCTTTTCTATTCTCCTCCATTTTGAGATGGACTCCCGCCGGCGATCGACCTCCAAAGCCACCACCGCCCCCCCA
CCACCACCACACATGAAAATGAAAATGGGAGTGGGAGTGGGAGTGGGTCTACATCAACATCACAATGATAAAGAGCTCAA
GGCCTCAGACGCTTTGCCACTCCCACTTTACCTCACCAATGCTGTCTTCTTCACTCTGTTTTTCTCTGTGGTCTACTTCT
TGCTCACTCGCTGGCGTGAGAAGATTCGTAACTCCACCCCTCTTCATGTCCTTAACTTGTCTGAGATAGTCGCCATCTTC
GCCTTCATCGCTTCCTTCATCTACCTCCTTGGTTTCTTCGGAATCGATTTTGTCCAGTCGATTCTTCGACCTTCCACTGA
TCTCTGGCCTAACGAGGATGAAATCGACGATGCCCAGAACCCAGACGAAATCGTTCTTAGAGAAGACTCTCGTAAAGTCC
CTTGTGGTGCTGGCCTCGATTGCTCCCCT




Most similar to sp|O64966|HMDH1_GOSHI

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O64966|HMDH1_GOSHI 3-hydroxy-3-methylglutaryl-coenzyme A
           reductase 1 OS=Gossypium hirsutum GN=HMG1 PE=3 SV=1
          Length = 585

 Score =  149 bits (375), Expect = 2e-35
 Identities = 80/122 (65%), Positives = 89/122 (72%), Gaps = 2/122 (1%)
 Frame = +2

Query: 227 DKELKASDALPLPLYLTNAVFFTLFFSVVYFLLTRWREKIRNSTPLHVLNLSEIVXXXXX 406
           D   KASDALPLPLYLTNAVFFTLFFS VYFLL RWREKIR+STPLHV+  SEIV     
Sbjct: 25  DDSTKASDALPLPLYLTNAVFFTLFFSAVYFLLCRWREKIRSSTPLHVVTFSEIVAILAS 84

Query: 407 XXXXXYLLGFFGIDFVQS-ILRPSTDLWPNEDEIDDAQNPDEIVLR-EDSRKVPCGAGLD 580
                YLLGFFGIDFVQS +LRPS D+W  ED+    +   E++LR ED+R VPCG  LD
Sbjct: 85  VASFIYLLGFFGIDFVQSLVLRPSADVWATEDD----EVESEVLLRNEDARHVPCGQALD 140

Query: 581 CS 586
            S
Sbjct: 141 RS 142